Index

Symbols

--alpha rs.diffmap command line option rs.internal_diffmap command line option --bounds_p rs.mle_dw_extrapolate command line option --bounds_r rs.mle_dw_extrapolate command line option --calcmtz rs.extrapolate command line option --cell rs.precog2mtz command line option rs.rfree command line option --csv-out rs.find_difference_peaks command line option rs.find_peaks command line option --default_scan rs.dw_extrapolate command line option --disable-progress-bar rs.dw_extrapolate command line option --disable_progress_bar rs.mle_dw_extrapolate command line option --distance-cutoff rs.find_difference_peaks command line option rs.find_peaks command line option --dmax rs.diffmap command line option rs.internal_diffmap command line option --dmin rs.rfree command line option --es-fraction rs.dw_extrapolate command line option --factor rs.dw_extrapolate command line option rs.extrapolate command line option --from-file rs.rfree command line option --help rs.ccanom command line option rs.cchalf command line option rs.ccpred command line option rs.ccsym command line option rs.diffmap command line option rs.dw_extrapolate command line option rs.extrapolate command line option rs.find_difference_peaks command line option rs.find_peaks command line option rs.internal_diffmap command line option rs.mle_dw_extrapolate command line option rs.precog2mtz command line option rs.rfree command line option rs.scaleit command line option, [1] --ignore-isomorphism rs.scaleit command line option, [1] --image rs.ccanom command line option rs.cchalf command line option rs.ccpred command line option rs.ccsym command line option --init_p rs.mle_dw_extrapolate command line option --init_r rs.mle_dw_extrapolate command line option --inputmtz rs.internal_diffmap command line option rs.scaleit command line option, [1] --maxiter rs.mle_dw_extrapolate command line option --method rs.ccanom command line option rs.cchalf command line option rs.ccpred command line option rs.ccsym command line option --min-peak rs.find_difference_peaks command line option rs.find_peaks command line option --min-score rs.find_difference_peaks command line option rs.find_peaks command line option --min-volume rs.find_difference_peaks command line option rs.find_peaks command line option --mod2 rs.ccpred command line option rs.ccsym command line option --mtz-out rs.precog2mtz command line option --nproc rs.dw_extrapolate command line option rs.mle_dw_extrapolate command line option --nsamples rs.dw_extrapolate command line option rs.mle_dw_extrapolate command line option --offmtz rs.diffmap command line option rs.dw_extrapolate command line option rs.extrapolate command line option rs.mle_dw_extrapolate command line option --onmtz rs.diffmap command line option rs.dw_extrapolate command line option rs.extrapolate command line option rs.mle_dw_extrapolate command line option --op rs.ccsym command line option --out rs.mle_dw_extrapolate command line option --outfile rs.diffmap command line option rs.dw_extrapolate command line option rs.extrapolate command line option rs.internal_diffmap command line option rs.rfree command line option rs.scaleit command line option, [1] --output rs.ccanom command line option rs.cchalf command line option rs.ccpred command line option rs.ccsym command line option --overall rs.ccpred command line option --phase-key rs.find_difference_peaks command line option rs.find_peaks command line option --rDW rs.dw_extrapolate command line option --refmtz rs.diffmap command line option rs.extrapolate command line option rs.internal_diffmap command line option rs.scaleit command line option, [1] --remove-sys-absences rs.precog2mtz command line option --rfraction rs.rfree command line option --sample-rate rs.find_difference_peaks command line option rs.find_peaks command line option --seed rs.dw_extrapolate command line option rs.mle_dw_extrapolate command line option rs.rfree command line option

--show rs.ccanom command line option rs.cchalf command line option rs.ccpred command line option rs.ccsym command line option --sigma-cutoff rs.find_difference_peaks command line option rs.find_peaks command line option --spacegroup rs.ccsym command line option rs.internal_diffmap command line option rs.precog2mtz command line option rs.rfree command line option --spacegroup-for-absences rs.precog2mtz command line option --structure-factor-key rs.find_difference_peaks command line option rs.find_peaks command line option --subset rs.mle_dw_extrapolate command line option --symop rs.internal_diffmap command line option --use-long-names rs.find_difference_peaks command line option rs.find_peaks command line option --use_intensities rs.dw_extrapolate command line option rs.mle_dw_extrapolate command line option --use_structure_factors rs.dw_extrapolate command line option rs.mle_dw_extrapolate command line option --weight-key rs.find_difference_peaks command line option rs.find_peaks command line option -a rs.diffmap command line option rs.internal_diffmap command line option -c rs.rfree command line option -calc rs.extrapolate command line option -d rs.diffmap command line option rs.find_difference_peaks command line option rs.find_peaks command line option rs.internal_diffmap command line option rs.rfree command line option -f rs.dw_extrapolate command line option rs.extrapolate command line option rs.find_difference_peaks command line option rs.find_peaks command line option rs.rfree command line option -h rs.ccanom command line option rs.cchalf command line option rs.ccpred command line option rs.ccsym command line option rs.diffmap command line option rs.dw_extrapolate command line option rs.extrapolate command line option rs.find_difference_peaks command line option rs.find_peaks command line option rs.internal_diffmap command line option rs.mle_dw_extrapolate command line option rs.precog2mtz command line option rs.rfree command line option rs.scaleit command line option, [1] -i rs.ccanom command line option rs.cchalf command line option rs.ccpred command line option rs.ccsym command line option rs.internal_diffmap command line option rs.scaleit command line option, [1] -m rs.ccanom command line option rs.cchalf command line option rs.ccpred command line option rs.ccsym command line option -n rs.dw_extrapolate command line option rs.mle_dw_extrapolate command line option -o rs.ccanom command line option rs.cchalf command line option rs.ccpred command line option rs.ccsym command line option rs.diffmap command line option rs.dw_extrapolate command line option rs.extrapolate command line option rs.find_difference_peaks command line option rs.find_peaks command line option rs.internal_diffmap command line option rs.mle_dw_extrapolate command line option rs.precog2mtz command line option rs.rfree command line option rs.scaleit command line option, [1] -off rs.diffmap command line option rs.dw_extrapolate command line option rs.extrapolate command line option -on rs.diffmap command line option rs.dw_extrapolate command line option rs.extrapolate command line option -op rs.internal_diffmap command line option -p rs.dw_extrapolate command line option rs.find_difference_peaks command line option rs.find_peaks command line option -r rs.diffmap command line option rs.dw_extrapolate command line option rs.internal_diffmap command line option rs.rfree command line option rs.scaleit command line option, [1] -ref rs.extrapolate command line option -s rs.ccanom command line option rs.cchalf command line option rs.ccpred command line option rs.ccsym command line option rs.rfree command line option -sg rs.ccsym command line option rs.internal_diffmap command line option rs.rfree command line option -use_I rs.dw_extrapolate command line option rs.mle_dw_extrapolate command line option -use_SF rs.dw_extrapolate command line option rs.mle_dw_extrapolate command line option -w rs.find_difference_peaks command line option rs.find_peaks command line option -z rs.find_difference_peaks command line option rs.find_peaks command line option

I

ii_in rs.precog2mtz command line option

M

mtz rs.ccanom command line option rs.cchalf command line option rs.ccsym command line option

mtz_file rs.find_difference_peaks command line option rs.find_peaks command line option mtzs rs.ccpred command line option

P

pdb_file rs.find_difference_peaks command line option rs.find_peaks command line option

R

rs.ccanom command line option --help --image --method --output --show -h -i -m -o -s mtz rs.cchalf command line option --help --image --method --output --show -h -i -m -o -s mtz rs.ccpred command line option --help --image --method --mod2 --output --overall --show -h -i -m -o -s mtzs rs.ccsym command line option --help --image --method --mod2 --op --output --show --spacegroup -h -i -m -o -s -sg mtz rs.diffmap command line option --alpha --dmax --help --offmtz --onmtz --outfile --refmtz -a -d -h -o -off -on -r rs.dw_extrapolate command line option --default_scan --disable-progress-bar --es-fraction --factor --help --nproc --nsamples --offmtz --onmtz --outfile --rDW --seed --use_intensities --use_structure_factors -f -h -n -o -off -on -p -r -use_I -use_SF sigf_col, [1] sigi_col, [1] rs.extrapolate command line option --calcmtz --factor --help --offmtz --onmtz --outfile --refmtz -calc -f -h -o -off -on -ref rs.find_difference_peaks command line option --csv-out --distance-cutoff --help --min-peak --min-score --min-volume --phase-key --sample-rate --sigma-cutoff --structure-factor-key --use-long-names --weight-key -d -f -h -o -p -w -z mtz_file pdb_file

rs.find_peaks command line option --csv-out --distance-cutoff --help --min-peak --min-score --min-volume --phase-key --sample-rate --sigma-cutoff --structure-factor-key --use-long-names --weight-key -d -f -h -o -p -w -z mtz_file pdb_file rs.internal_diffmap command line option --alpha --dmax --help --inputmtz --outfile --refmtz --spacegroup --symop -a -d -h -i -o -op -r -sg rs.mle_dw_extrapolate command line option --bounds_p --bounds_r --disable_progress_bar --help --init_p --init_r --maxiter --nproc --nsamples --offmtz --onmtz --out --seed --subset --use_intensities --use_structure_factors -h -n -o -use_I -use_SF rs.precog2mtz command line option --cell --help --mtz-out --remove-sys-absences --spacegroup --spacegroup-for-absences -h -o ii_in rs.rfree command line option --cell --dmin --from-file --help --outfile --rfraction --seed --spacegroup -c -d -f -h -o -r -s -sg rs.scaleit command line option --help, [1] --ignore-isomorphism, [1] --inputmtz, [1] --outfile, [1] --refmtz, [1] -h, [1] -i, [1] -o, [1] -r, [1]

S

sigf_col rs.dw_extrapolate command line option, [1]

sigi_col rs.dw_extrapolate command line option, [1]